mysql-query-browser newbie question

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I'm using the gui tools mysql-query-browser, inserting into an innodb
table. Autocommit is turned off at the server level with
"init_connect='SET AUTOCOMMIT=0'". Immediately after executing the
insert, a select does *not* show the new row. If I do the same thing in
the mysql command line tool, it shows the new row. What's going on?
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